e*****t
发帖数: 642 | 1 知道一个mRNA snp和它在genome上的位置。如何知道编码的蛋白突变位点？genome
browser，ensembl或者ncbi应该都行，但是看了半天没看出来。高手帮帮忙 |
X***n
发帖数: 366 | 2 In UCSC genome browser, search your gene, zoom in to about 100 bp
you can see the details. |
e*****t
发帖数: 642 | 3 hehe, thanks buddy.but how could i know what's the correspondent protein
mutation to that snp.
and i have thousands of such data, how can i do that in batch?
【在 X***n 的大作中提到】
: In UCSC genome browser, search your gene, zoom in to about 100 bp
: you can see the details.
|
X***n
发帖数: 366 | 4 For thousands of such data, use biopython or bioperl.
protein
【在 e*****t 的大作中提到】
: hehe, thanks buddy.but how could i know what's the correspondent protein
: mutation to that snp.
: and i have thousands of such data, how can i do that in batch?
|
d*******e
发帖数: 1649 | 5 try this
http://gvs.gs.washington.edu/SeattleSeqAnnotation/
【在 e*****t 的大作中提到】
: hehe, thanks buddy.but how could i know what's the correspondent protein
: mutation to that snp.
: and i have thousands of such data, how can i do that in batch?
|
e*****t
发帖数: 642 | 6 nice tool. but not work for me. Our snps idenfitied by ours only. it's not
in any database yet. so we don't have snp id.
【在 d*******e 的大作中提到】
: try this
: http://gvs.gs.washington.edu/SeattleSeqAnnotation/
|
e*****t
发帖数: 642 | 7 could you specify a little bit. I know python. but not use biopython very
often.
【在 X***n 的大作中提到】
: For thousands of such data, use biopython or bioperl.
:
: protein
|
e*****t
发帖数: 642 | 8 i think i figure that out
download the trancript. use biopython to translate those DNA seq to protein.
thank you guys for help. |
